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encyclopedia of Rare Disease Annotation for Precision Medicine



   schimke immuno-osseous dysplasia
  

Disease ID 986
Disease schimke immuno-osseous dysplasia
Definition
The multiple symptoms of SIOD and the relative frequency of them are listed in the table. The symptoms are subsequently discussed in according to the organ system affected.Physical TraitsMost affected individuals have distinctive physical features. These include fine hair (60%), a thin upper lip, a broad, low nasal bridge (68%), a bulbous nasal tip (83%), and disproportionately short stature (98%). Additional features include excessive inward curvature of the lumbar spine (lumbar lordosis, 84%), a protruding abdomen, and hyperpigmented macules (85%) on the trunk and occasionally on the neck, face, arms and legs. Less common physical features include absent or small teeth and corneal opacities (19%).Growth and Skeletal SystemGrowth failure, which is often the first obvious sign of SIOD, occurs despite normal growth hormone production and is not corrected with growth hormone supplementation. In most affected individuals, the growth failure begins prior to and continues after birth; however, some affected individuals do have normal birth lengths and weights and their growth failure is not noted until after birth (range: 0 to 13 years, mean: 2 years). The heights of those who survived to adulthood were 136-157 cm for men and 98.5-143 cm for women.The short stature arises generally because of spondyloepiphyseal dysplasia (86%), a disorder of skeletal growth; it does not arise as a complication of their renal failure. The anthropometric characteristics of patients with SIOD differed markedly from those of patients with other forms of chronic kidney disease, especially with respect to median leg length and sitting height. The spinal column and hip joint are most severely affected. The radiological abnormalities include ovoid or mildly flattened vertebral bodies, small and laterally displaced femurs (thigh bone), and shallow abnormal acetabular fossae (hip sockets). Less frequent skeletal problems include lordosis, kyphosis and scoliosis (abnormal curvatures of the spine) as well as osteopenia (decreased bone mineral density) and degenerative hip disease. Many patients have required hip replacements.Endocrine SystemApproximately 42% of individuals with SIOD have reduced thyroid function. However, to date, the poor thyroid function has not caused clinical symptoms (subclinical hypothyroidism). Among those who have received thyroid hormone supplementation, the correction of thyroid hormone levels does not mitigate other symptoms of SIOD.Renal SystemAll reported affected individuals have eventually developed renal dysfunction. The kidney disease is characterized by progressively worsening loss of protein in the urine and ultimately concludes with renal failure. The progressive renal disease is not responsive to immunosuppressant therapy. The diagnosis of renal dysfunction is usually made concurrent with or within the five years following the diagnosis of the growth failure. Renal failure requiring dialysis or kidney transplantation usually develops within the subsequent 11 years, although the rate of progression varies greatly. Because renal disease causes high blood pressure and high levels of blood cholesterol and lipids, we postulate that it accentuates the vascular disease of SIOD; however, renal transplantation does not prevent progression of the atherosclerosis.Cardiovascular systemHalf of SIOD individuals develop clinical signs of atherosclerosis. The onset is often in early childhood and relentlessly progressive. The disease is not abrogated by renal or bone marrow transplantation nor by cholesterol lowering agents, although the cholesterol lowering agents and renal transplantation can slow the progression by mitigating factors such as high blood pressure and high blood lipid and cholesterol levels. Consistent with the atherosclerosis resulting from an intrinsic defect of SIOD tissue, the vascular disease does not recur in the transplanted kidneys. Besides atherosclerosis, splitting and fraying of the arterial internal elastic layer and thickening of the muscular layer of the arterial walls have been found on autopsy. The latter finding may be a complication of high blood pressure or an intrinsic defect in the blood vessels. A few patients have also developed subaortic stenosis and one patient had extensive fatty infiltration resembling that of arrhythmogenic right ventricular cardiomyopathy.Central nervous system (CNS)The central nervous system shows both mutiple developmental and ischemic changes. The developmental defects include brain malformations suggestive of aberrant neuronal migration including heterotopia, irregular cortical thickness, incomplete gyral formation, poor definition of cortical layers, and hamartia. Additionally adolescent and adult patients have very few neural progenitors (stem cells). Despite these malformations, most SIOD patients have normal social, language, motor, and cognitive development until the onset of symptoms from reduced brain blood supply (cerebral ischemia).The cerebral ischemia can either temporarily or permanently disturb the blood supply of a given area of the brain and thereby cause temporary (47%, transient ischemic attacks) or permanent (44%, strokes) dysfunction. The cerebral ischemic attacks and strokes are often precipitated by acute changes in blood pressure, such as following the administration of high doses of steroids. Ischemic changes include loss of neurons and myelin, gliosis (scarring), brain atrophy, and degeneration of infarcted regions including atrophy of the cerebellum. Likely as a complication of the cerebral ischemia and atherosclerosis, a few of the patients have also manifest moyamoya phenomenon.Another common neurological feature in SIOD patients is severe migraine-like headaches (60%). The cause of the headaches is still unknown but they tend to be more severe and refractory to anti-migraine medications that migraine-like headaches in the general population.Pulmonary systemSeveral patients have died from pulmonary complications including pulmonary emboli, pulmonary hypertension, and lung disease. Lung abnormalities identified by autopsy include diffuse thickening (hyperplasia) of the airway (bronchial) smooth muscles, enlargement (emphysematous changes) of the gas exchange regions (alveoli), and diffuse hyperplasia of the pulmonary artery smooth muscles. The last finding could account for the pulmonary hypertension observed in some patients.Hematopoietic and Immune SystemsNearly all affected individuals have some blood cell deficiency. Deficiency of T lymphocytes, a subgroup of white blood cells that plays an important role in immunity, is most common (97%). However, in addition to a deficit of T lymphocytes, the hematopoietic disturbance can include any or all other blood cell lineages.Because of their immunodeficiency, affected individuals have an increased risk for opportunistic fungal, viral and bacterial infections. They also have an increased risk of more severe infections.Reproductive systemFew SIOD patients have reached sexual maturity and of the ones who have, no children were subsequently born. However, the patients who have survived to adulthood did develop with secondary sexual characteristics and the women have menstrual cycles. The autopsy of two affected males revealed that sperm production was affected in a varying degree. In one patient, the testes showed interstitial fibrosis and absence of sperm (azoospermia), whereas the other had less interstitial fibrosis individual and produced some sperm. - NORD
Reference: NORD
Synonym
immunoosseous dysplasia schimke type
immunoosseous dysplasia, schimke type
schimke immunoosseous dysplasia
siod
Orphanet
OMIM
DOID
UMLS
C0877024
Comorbidity
UMLS | Disease | Sentences' Count(Total Sentences:8)
Curated Gene
Entrez_id | Symbol | Resource(Total Genes:1)
50485  |  SMARCAL1  |  CLINVAR;CTD_human;ORPHANET;UNIPROT
Inferring Gene(Waiting for update.)
Text Mined Gene
Entrez_id | Symbol | Score | Resource(Total Genes:12)
265  |  AMELX  |  2.078  |  DISEASES
460  |  ASTN1  |  3.848  |  DISEASES
546  |  ATRX  |  1.626  |  DISEASES
11177  |  BAZ1A  |  3.92  |  DISEASES
1876  |  E2F6  |  3.005  |  DISEASES
2335  |  FN1  |  1.535  |  DISEASES
2760  |  GM2A  |  2.936  |  DISEASES
5888  |  RAD51  |  2.169  |  DISEASES
84268  |  RPAIN  |  2.576  |  DISEASES
6594  |  SMARCA1  |  3.065  |  DISEASES
6597  |  SMARCA4  |  5.215  |  DISEASES
50485  |  SMARCAL1  |  8.157  |  DISEASES
Locus
Symbol | Locus(Total Locus:1)
SMARCAL1  |  2q35
Disease ID 986
Disease schimke immuno-osseous dysplasia
Integrated Phenotype
HPO | Name(Total Integrated Phenotypes:58)
HP:0000938  |  Decreased bone mineral density
HP:0000470  |  Short neck
HP:0003300  |  Oval vertebral bodies
HP:0000691  |  Decreased width of tooth
HP:0001888  |  Lymphocytopenia
HP:0003521  |  Disproportionate short-trunk short stature
HP:0000097  |  focal glomerulosclerosis
HP:0005930  |  Abnormality of epiphysis morphology
HP:0007759  |  Cloudy cornea
HP:0010701  |  Abnormal serum level of immunoglobulin
HP:0005280  |  Depressed nasal bridge
HP:0000093  |  Proteinuria
HP:0000470  |  Decreased cervical height
HP:0000083  |  Renal insufficiency
HP:0001034  |  Hyperpigmented spots
HP:0100820  |  Glomerulopathy
HP:0002326  |  TIA
HP:0001873  |  Thrombocytopenia
HP:0005374  |  Cellular immunodeficiency
HP:0002938  |  Exaggerated lumbar lordosis
HP:0003307  |  Hyperlordosis
HP:0002719  |  infections, recurrent
HP:0000822  |  Hypertension
HP:0001888  |  Lymphopenia
HP:0002925  |  Increased serum thyroid-stimulating hormone
HP:0000100  |  Nephrosis
HP:0001511  |  Intrauterine growth retardation
HP:0002843  |  Cellular immune defect
HP:0002843  |  Abnormality of T cells
HP:0006453  |  Laterally displaced femoral heads
HP:0001538  |  Protuberant abdomen
HP:0001903  |  Anemia
HP:0001270  |  Motor retardation
HP:0003182  |  Shallow acetabulae
HP:0002213  |  Thin hair shaft
HP:0003312  |  Abnormal form of the vertebral bodies
HP:0002942  |  Thoracic kyphosis
HP:0000545  |  Near sightedness
HP:0005280  |  Flat, nasal bridge
HP:0000483  |  Astigmatism
HP:0001875  |  Neutropenia
HP:0000926  |  Platyspondyly
HP:0001873  |  Low platelet count
HP:0001511  |  Prenatal onset growth retardation
HP:0000926  |  Flattened vertebral bodies
HP:0000995  |  Melanocytic nevus
HP:0002515  |  Waddling gait
HP:0002208  |  Coarse hair texture
HP:0000691  |  Microdontia
HP:0003300  |  Ovoid vertebral bodies
HP:0002634  |  Arteriosclerosis
HP:0003090  |  Hypoplasia of the capital femoral epiphysis
HP:0000100  |  Nephrotic syndrome
HP:0002827  |  Hip dislocation
HP:0001620  |  High pitched voice
HP:0007565  |  Multiple cafe-au-lait spots
HP:0000414  |  Bulbous nose
HP:0002655  |  Spondyloepiphyseal dysplasia
Text Mined Phenotype
HPO | Name | Sentences' Count(Total Phenotypes:11)
Disease ID 986
Disease schimke immuno-osseous dysplasia
Manually Symptom(Waiting for update.)
Text Mined Symptom(Waiting for update.)
Manually Genotype(Total Text Mining Genotypes:0)
(Waiting for update.)
Text Mining Genotype(Total Genotypes:0)
(Waiting for update.)
All Snps(Total Genotypes:7)
snpId pubmedId geneId geneSymbol diseaseId sourceId sentence score Year geneSymbol_dbSNP CHROMOSOME POS REF ALT
rs119473033NA50485SMARCAL1umls:C0877024CLINVARNA0.566243163NASMARCAL12216478216GT
rs119473034NA50485SMARCAL1umls:C0877024CLINVARNA0.566243163NASMARCAL12216414753CT
rs119473035NA50485SMARCAL1umls:C0877024CLINVARNA0.566243163NASMARCAL12216414804CT
rs119473036NA50485SMARCAL1umls:C0877024CLINVARNA0.566243163NASMARCAL12216435495TA
rs119473037NA50485SMARCAL1umls:C0877024CLINVARNA0.566243163NASMARCAL12216450927CT
rs119473038NA50485SMARCAL1umls:C0877024CLINVARNA0.566243163NASMARCAL12216447063CT
rs267607071NA50485SMARCAL1umls:C0877024CLINVARNA0.566243163NASMARCAL12216475315GA
GWASdb Annotation(Total Genotypes:0)
(Waiting for update.)
GWASdb Snp Trait(Total Genotypes:0)
(Waiting for update.)
Mapped by lexical matching(Total Items:19)
HP ID HP Name MP ID MP Name Annotation
HP:0002942Thoracic kyphosisMP:0000160kyphosisforward curvature of the spine, characterized by extensive flexion
HP:0010701Abnormal immunoglobulin levelMP:0008752abnormal tumor necrosis factor leveldeviation from the normal levels of a serum glycoprotein produced by activated macrophages and NK cells and involved in initiating local inflammatory responses, particularly by its action on the endothelium of local blood vessels; its actions result in in
HP:0007759Opacification of the corneal stromaMP:0012129failure of blastocyst formationinability to form a blastocyst from a solid ball of cells known as a morula
HP:0001511Intrauterine growth retardationMP:0011109lethality throughout fetal growth and development, incomplete penetrancethe appearance of lower than Mendelian ratios of organisms of a given genotype due to death of some, but not all of the organisms between the completion of organogenesis and birth (Mus: E14 to approximately E18.5)
HP:0000097Focal segmental glomerulosclerosisMP:0005264glomerulosclerosishyaline deposits or scarring within the renal glomeruli, often occurring with renal arteriosclerosis or diabetes
HP:0005930Abnormality of epiphysis morphologyMP:0013621decreased internal diameter of femurreduced cross-sectional distance that extends from one lateral edge of the femur long bone marrow cavity, through its center and to the opposite lateral edge of the bone marrow cavity through the mid point of the femur
HP:0000470Short neckMP:0012720elongated neckincreased length of the neck
HP:0003521Disproportionate short-trunk short statureMP:0004355short radiusreduced length of the short bone of the lateral forearm
HP:0000083Renal insufficiencyMP:0003335exocrine pancreatic insufficiencyinadequate synthesis and/or secretion of digestive enzymes by the exocrine portion of the pancreas, usually due to loss of acinar tissue from idiopathic atrophy or acute or chronic inflammation, causing maldigestion and malabsorption of nutrients
HP:0002213Fine hairMP:0010685abnormal hair follicle inner root sheath morphologyany structural anomaly of the multilayered tube composed of terminally differentiated hair follicle keratinocytes that is surrounded by the outer root sheath; the layers of the inner root sheath include the companion layer, Henle's layer, Huxley's layer a
HP:0002208Coarse hairMP:0010685abnormal hair follicle inner root sheath morphologyany structural anomaly of the multilayered tube composed of terminally differentiated hair follicle keratinocytes that is surrounded by the outer root sheath; the layers of the inner root sheath include the companion layer, Henle's layer, Huxley's layer a
HP:0002515Waddling gaitMP:0001406abnormal gaitabnormal pattern of movement of the limbs of animals, characterized by elements of progression, stability, speed and length over the ground
HP:0002843Abnormality of T cellsMP:0008074increased CD4-positive, alpha beta T cell numbergreater number of the subset of T lymphocytes that carry the CD4 marker, recognize intravesicular peptides bound to MHC class-II molecules, and turn on antibody production
HP:0003312Abnormal form of the vertebral bodiesMP:0020010decreased bone mineral density of femurreduction in the quatitative measurment value of mineral content of bone in the long bone of the thigh
HP:0005280Depressed nasal bridgeMP:0013582abnormal lateral nasal gland morphologyany structural anomaly of the lateral nasal glands (the largest nasal secretory glands in rodents) which surround the maxillary sinus located in the lateral wall adjacent to each nasal passage and are characterized by cytologic features similar to those d
HP:0003300Ovoid vertebral bodiesMP:0004704short vertebral columndecreased rostral-caudal length of the complete structure forming the rostral-caudal axis of the skeleton formed from the alternating segments of vertebra and intervertebral discs which support the spinal cord
HP:0003090Hypoplasia of the capital femoral epiphysisMP:0010919increased number of pulmonary neuroendocrine bodiesgreater number of the corpuscular, organoid structures composed of PNECs, found as distinctive innervated clusters only within intrapulmonary airways, where they appear concentrated at airway branch points; NEBs reach from the basement membrane to the air
HP:0001538Protuberant abdomenMP:0001270distended abdomenabdomen appears curved outward or swollen
HP:0002925Thyroid-stimulating hormone excessMP:0005468abnormal thyroid hormone levelaberrant concentration of any of the hormones secreted by the thyroid gland
Mapped by homologous gene(Total Items:48)
HP ID HP Name MP ID MP Name Annotation
HP:0003521Disproportionate short-trunk short statureMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0005930Abnormality of epiphysis morphologyMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000097Focal segmental glomerulosclerosisMP:0013310abnormal adrenal gland developmentaberrant formation or incomplete differentiation of the pair of endocrine glands located above the kidney that are responsible for steroid hormone secretion from the cortex and neurotransmitter (such as epinephrine and norepinephrine) secretion from the m
HP:0002326Transient ischemic attackMP:0013696increased granulocyte monocyte progenitor cell numberincrease in the number of a hematopoietic progenitor cell that is committed to the granulocyte and monocyte lineages; these cells are CD123-positive, and do not express Gata1 or Gata2 but do express C/EBPa, and Pu.1
HP:0003307HyperlordosisMP:0020309increased creatine kinase activityincreased ability of to catalyze the reaction: ATP + creatine = N-phosphocreatine + ADP + 2 H(+).
HP:0002213Fine hairMP:0013897decreased eyelid cilium numberreduction in the number of the hairs that grow at the edge of the upper or lower eyelid
HP:0000995Melanocytic nevusMP:0020039increased bone ossificationincrease in the formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance
HP:0002515Waddling gaitMP:0020309increased creatine kinase activityincreased ability of to catalyze the reaction: ATP + creatine = N-phosphocreatine + ADP + 2 H(+).
HP:0007759Opacification of the corneal stromaMP:0020329decreased capillary densityreduction in the number of capillaries in a given cross-sectional area of a tissue
HP:0001903AnemiaMP:0020316decreased vascular endothelial cell proliferationdecrease in the expansion rate of any vascular endothelial cell population by cell division
HP:0001620High pitched voiceMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0002634ArteriosclerosisMP:0011704decreased fibroblast proliferationreduction in the expansion rate of a fibroblast cell population by cell division
HP:0100820GlomerulopathyMP:0014169decreased brown adipose tissue massdecreased physical bulk or volume of brown adipose tissue
HP:0000093ProteinuriaMP:0020216decreased circulating complement protein levelless than normal levels of the serum proteins that act sequentially to allow for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes
HP:0001511Intrauterine growth retardationMP:0020329decreased capillary densityreduction in the number of capillaries in a given cross-sectional area of a tissue
HP:0002827Hip dislocationMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000938OsteopeniaMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0002208Coarse hairMP:0014178increased brain apoptosisincrease in the number of cells of the brain undergoing programmed cell death
HP:0005280Depressed nasal bridgeMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0001873ThrombocytopeniaMP:0020329decreased capillary densityreduction in the number of capillaries in a given cross-sectional area of a tissue
HP:0007565Multiple cafe-au-lait spotsMP:0014040increased cellular sensitivity to DNA damaging agentsgreater incidence of cell death following exposure to agents that cause DNA damage
HP:0002938Lumbar hyperlordosisMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0003300Ovoid vertebral bodiesMP:0014185cerebellum atrophyacquired diminution of the size of the cerebellum associated with wasting as from death and reabsorption of cells, diminished cellular proliferation, decreased cellular volume, pressure, ischemia, malnutrition, reduced function or malfunction, or hormonal
HP:0002942Thoracic kyphosisMP:0014164abnormal ciliary process morphology any structural anomaly of any of the pigmented processes that radiate from the ciliary muscle and give attachments to ligaments supporting the lens of the eye; these processes increase in thickness as they advance from the orbiculus ciliaris to the exter
HP:0000483AstigmatismMP:0020157abnormal behavioral response to alcoholany anomaly in the behavioral response induced by alcohol, such as induced hyperactivity or stereotypic behavior
HP:0003090Hypoplasia of the capital femoral epiphysisMP:0013886increased CD4-negative, CD25-positive NK T cell numberincrease in the number of CD4-negative NK T cells expressing the activation marker CD25
HP:0000470Short neckMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0000083Renal insufficiencyMP:0020316decreased vascular endothelial cell proliferationdecrease in the expansion rate of any vascular endothelial cell population by cell division
HP:0005374Cellular immunodeficiencyMP:0020154impaired humoral immune responseimpaired response of the immune system that mediates secreted antibodies produced in B cells
HP:0002655Spondyloepiphyseal dysplasiaMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0001875NeutropeniaMP:0020215impaired blood coagulationimpaired ability of the blood to clot
HP:0010701Abnormal immunoglobulin levelMP:0020186altered susceptibility to bacterial infectiona change in the likelihood that an organism will develop ill effects from a bacterial infection or from components of or toxins produced by bacteria
HP:0000691MicrodontiaMP:0020039increased bone ossificationincrease in the formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance
HP:0003312Abnormal form of the vertebral bodiesMP:3000003abnormal Ebner's gland morphologyany structural anomaly of the serous salivary glands which reside adjacent to the moats surrounding the circumvallate and foliate papillae just anterior to the posterior third of the tongue, anterior to the terminal sulcus; these exocrine glands secrete l
HP:0000100Nephrotic syndromeMP:0020216decreased circulating complement protein levelless than normal levels of the serum proteins that act sequentially to allow for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes
HP:0001888LymphopeniaMP:0020154impaired humoral immune responseimpaired response of the immune system that mediates secreted antibodies produced in B cells
HP:0002925Thyroid-stimulating hormone excessMP:0020169increased thyroid gland weighthigher than average weight of the thyroid gland
HP:0001538Protuberant abdomenMP:0020137decreased bone mineralizationdecrease in the rate at which minerals are deposited into bone
HP:0002719Recurrent infectionsMP:0020234decreased basal metabolismdecrease in heat production of an organism at the lowest level of cell chemistry in an inactive, awake, and fasting state
HP:0001270Motor delayMP:0020316decreased vascular endothelial cell proliferationdecrease in the expansion rate of any vascular endothelial cell population by cell division
HP:0000545MyopiaMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0000926PlatyspondylyMP:0020254decreased collagen leveldecreased level of the main structural protein of the various connective tissues in animals
HP:0000414Bulbous noseMP:0020321increased vascular endothelial cell apoptosisincrease in the timing or the number of vascular endothelial cells undergoing programmed cell death
HP:0002843Abnormality of T cellsMP:0020154impaired humoral immune responseimpaired response of the immune system that mediates secreted antibodies produced in B cells
HP:0001034Hypermelanotic maculeMP:0020154impaired humoral immune responseimpaired response of the immune system that mediates secreted antibodies produced in B cells
HP:0006453Lateral displacement of the femoral headMP:0011704decreased fibroblast proliferationreduction in the expansion rate of a fibroblast cell population by cell division
HP:0003182Shallow acetabular fossaeMP:0020039increased bone ossificationincrease in the formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance
HP:0000822HypertensionMP:0020216decreased circulating complement protein levelless than normal levels of the serum proteins that act sequentially to allow for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes
Disease ID 986
Disease schimke immuno-osseous dysplasia
Case(Waiting for update.)